BDgene

SNP Report

Basic Info
Name rs1365111 dbSNP Ensembl
Location chr3:187675118 - 187675118(1)
Variant Alleles G/A
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.169329
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000287641)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Yosifova, A.,2009 G/A Allelic association: P-value = 0.55 Allelic association: P-value = 0.55 No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SST somatostatin 3q28 1(0/1/0)

SNPs in LD with rs1365111 (count: 21) View in gBrowse (chr3:187633289..187679823 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 21)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016