BDgene

SNP Report

Basic Info
Name rs1344484 dbSNP Ensembl
Location chr16:52878387 - 52878387(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.458666
No. of Studies 3 (Positive: 0; Negative: 1; Trend: 2)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 3)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
The Wellcome Trust Case Control Consortium, 2007 T/C T Genotypic P-value = 1.03E-05; Heterozygote OR (95%CI)=1.24 ...... Genotypic P-value = 1.03E-05; Heterozygote OR (95%CI)=1.24 (1.03-1.48); Homozygote OR (95%CI)=1.52 (1.27-1.82) More... showing moderate evidence of association with BD showing moderate evidence of association with BD Trend
Ollila, H. M.,2009 T/C FBAT: P-value = 0.310807 FBAT: P-value = 0.310807 No significant association was observed No significant association was observed Negative
Jiang, Y.,2011 Non-weighted test under H0: P-value(additive)=0.00000165, P-...... Non-weighted test under H0: P-value(additive)=0.00000165, P-value(dominant)=0.0000262, P-value(recessive)=0.000397; weighted test under H'0: P-value(additive)=0.00000096, P-value(dominant)=0.00000749, P-value(recessive)=0.000674; logistic regression: P-value(additive)=0.00000107, P-value(dominant)=0.0000128, P-value(recessive)=0.000498 More... Suggestive association was found. Suggestive association was found. Trend

SNP related genes (count: 0)

SNPs in LD with rs1344484 (count: 30) View in gBrowse (chr16:52843783..52883405 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 30)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016