SNP Report

Basic Info
Name rs13360565 dbSNP Ensembl
Location chr5:150267195 - 150267195(1)
Variant Alleles G/T
Ancestral Allele G
Minor Allele T
Minor Allele Frequence 0.402356
Functional Annotation intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000348628, ENST00000398376, ENST00000507995, ENST00000508662, ENST00000510347); non_coding_transcript_variant(ENST00000507995, ENST00000508662); upstream_gene_variant(ENST00000515758)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Yosifova, A.,2009 G/T Allelic association: P-value = 0.48 Allelic association: P-value = 0.48 No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CAMK2A calcium/calmodulin-dependent protein kinase II alpha 5q32 2(1/1/0)

SNPs in LD with rs13360565 (count: 2) View in gBrowse (chr5:150250120..150267195 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)