BDgene

SNP Report

Basic Info
Name rs12900122 dbSNP Ensembl
Location chr15:60763212 - 60763212(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.247005
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000335670, ENST00000551975, ENST00000557822, ENST00000559145, ENST00000561093); NMD_transcript_variant(ENST00000551975); non_coding_transcript_variant(ENST00000557822, ENST00000559145, ENST00000561093); upstream_gene_variant(ENST00000558630, ENST00000560864)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Lai, Y. C., 2015 Empirical P-value=0.016, OR=0.74 Empirical P-value=0.016, OR=0.74 One of 45 SNPs showed associations with BD. One of 45 SNPs showed associations with BD. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RORA RAR-related orphan receptor A 15q21-q22 3(2/1/0)

SNPs in LD with rs12900122 (count: 5) View in gBrowse (chr15:60763212..60773408 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 5)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016