SNP Report

Basic Info
Name rs1274270 dbSNP Ensembl
Location chr3:114610562 - 114610562(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.114217
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000357258, ENST00000393785, ENST00000462705, ENST00000463890, ENST00000464560, ENST00000471418, ENST00000479879, ENST00000480832, ENST00000481632, ENST00000491500, ENST00000492665); non_coding_transcript_variant(ENST00000463890, ENST00000479879, ENST00000480832, ENST00000491500, ENST00000492665)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 T/C P-value=3.44E-06 P-value=3.44E-06 Top 132 SNPs (showing suggestive association to BD in our CA...... Top 132 SNPs (showing suggestive association to BD in our CAMH family cohort: p<0.0001). More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ZBTB20 zinc finger and BTB domain containing 20 3q13.2 1(0/1/0)

SNPs in LD with rs1274270 (count: 0) View in gBrowse (chr3:114610562..114610562 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)