SNP Report

Basic Info
Name rs12609580 dbSNP Ensembl
Location chr19:30529495 - 30529495(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.222244
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000355537, ENST00000585628)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 T/C Adjusted P(ADD)-value=2.46E-04, OR=1.575 Adjusted P(ADD)-value=2.46E-04, OR=1.575 SNPs from top 1000 from our combined CAMH/IoP GWAS for BPAD,...... SNPs from top 1000 from our combined CAMH/IoP GWAS for BPAD, for which at least one other non-overlapping GWAS also shows association at same gene. More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ZNF536 zinc finger protein 536 19q13.11 2(0/1/1)

SNPs in LD with rs12609580 (count: 6) View in gBrowse (chr19:30505082..30535636 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 6)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)