BDgene

SNP Report

Basic Info
Name rs11921360 dbSNP Ensembl
Location chr3:119893208 - 119893208(1)
Variant Alleles C/A
Ancestral Allele A
Minor Allele C
Minor Allele Frequence 0.234824
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000264235, ENST00000316626)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Saus, E.,2010 A/C association analyses with diagnosis: codominant P-value = 0....... association analyses with diagnosis: codominant P-value = 0.696, dominant P-value = 0.56, recessive P-value = 0.687, additive P-value = 0.823 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GSK3B glycogen synthase kinase 3 beta 3q13.3 8(0/8/0)

SNPs in LD with rs11921360 (count: 0) View in gBrowse (chr3:119893208..119893208 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Saus, E.,2010 association analyses with diagnosis:codominant P-value = 0.097, dominant P-value = 0.038, recessive P-value = 0.223, additive P-value = 0.033, all P-value > 0.05 after multiple testing correction. No significant association was observed. Negative

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016