BDgene

SNP Report

Basic Info
Name rs11615016 dbSNP Ensembl
Location chr12:72022214 - 72022214(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.0251597
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000333850)
No. of Studies 2 (Positive: 1; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Grigoroiu-Serbanescu, M.,2008 A/G Cochrane-Armitage trend test P value=0.049; Allelic OR (95%...... Cochrane-Armitage trend test P value=0.049; Allelic OR (95% CI)=1.71 (0.99-2.96) More... Positive
Cichon, S., 2008 A/G G Cochrane-Armitage trend test P-value > .0.5 in the German BP...... Cochrane-Armitage trend test P-value > .0.5 in the German BPAD sample. Cochrane-Armitage trend test P-value > .0.5 in the Russian BPAD sample. Cochrane-Armitage trend test P-value > .0.5 in Combined German/Russian sample. More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TPH2 tryptophan hydroxylase 2 12q15 13(10/3/0)

SNPs in LD with rs11615016 (count: 0) View in gBrowse (chr12:72022214..72022214 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)