SNP Report

Basic Info

Name	rs1134956 dbSNP Ensembl
Location	chr7:90309366 - 90309366(1)
Variant Alleles	C/A/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.380591
Functional Annotation	downstream_gene_variant; intron_variant; missense_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; splice_region_variant; upstream_gene_variant. Polyphen Annotation: probably damaging(ENST00000389297, ENST00000449577, ENST00000497910); benign(ENST00000412839) SIFT Annotation: deleterious(ENST00000412839, ENST00000389297, ENST00000449577, ENST00000497910)
Consequence to Transcript	downstream_gene_variant(ENST00000427396, ENST00000451029); intron_variant(ENST00000445156); missense_variant(ENST00000412839, ENST00000389297, ENST00000449577, ENST00000497910); non_coding_transcript_exon_variant(ENST00000475031); non_coding_transcript_variant(ENST00000475031); splice_region_variant(ENST00000412839, ENST00000475031, ENST00000389297, ENST00000449577, ENST00000497910); upstream_gene_variant(ENST00000445784)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Georgi, B., 2014	C/T		GERP=5.51 GERP=5.51	Putative damaging exonic variants found in the five linkage ...... Putative damaging exonic variants found in the five linkage regions. More...	Trend

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
C7orf63	cilia and flagella associated protein 69	7q21.13	Literature-origin; Mapped by Literature SNP
CFAP69	cilia and flagella associated protein 69	7q21.13	1(0/0/1)

SNPs in LD with rs1134956 (count: 0) View in gBrowse (chr7:90309366..90309366 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)