SNP Report

Basic Info
Name rs1134956 dbSNP Ensembl
Location chr7:90309366 - 90309366(1)
Variant Alleles C/A/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.380591
Functional Annotation downstream_gene_variant; intron_variant; missense_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; splice_region_variant; upstream_gene_variant.
Polyphen Annotation: probably damaging(ENST00000389297, ENST00000449577, ENST00000497910); benign(ENST00000412839)
SIFT Annotation: deleterious(ENST00000412839, ENST00000389297, ENST00000449577, ENST00000497910)
Consequence to Transcript downstream_gene_variant(ENST00000427396, ENST00000451029); intron_variant(ENST00000445156); missense_variant(ENST00000412839, ENST00000389297, ENST00000449577, ENST00000497910); non_coding_transcript_exon_variant(ENST00000475031); non_coding_transcript_variant(ENST00000475031); splice_region_variant(ENST00000412839, ENST00000475031, ENST00000389297, ENST00000449577, ENST00000497910); upstream_gene_variant(ENST00000445784)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Georgi, B., 2014 C/T GERP=5.51 GERP=5.51 Putative damaging exonic variants found in the five linkage ...... Putative damaging exonic variants found in the five linkage regions. More... Trend

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
C7orf63 cilia and flagella associated protein 69 7q21.13 Literature-origin; Mapped by Literature SNP
CFAP69 cilia and flagella associated protein 69 7q21.13 1(0/0/1)

SNPs in LD with rs1134956 (count: 0) View in gBrowse (chr7:90309366..90309366 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)