BDgene

SNP Report

Basic Info
Name rs11171856 dbSNP Ensembl
Location chr12:56448035 - 56448035(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.368411
Functional Annotation downstream_gene_variant; intron_variant.
Consequence to Transcript downstream_gene_variant(ENST00000257979, ENST00000555551); intron_variant(ENST00000229201, ENST00000553532)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Dmitrzak-Weglarz, M. P., 2014 C/T MD (BPD and UPD): P-value=0.0089, FDR=0.1492, OR=1.23, 95%CI...... MD (BPD and UPD): P-value=0.0089, FDR=0.1492, OR=1.23, 95%CI=1.05-1.44; BPDII: P-value=0.0074, FDR=0.1035, OR=1.48, 95%CI=1.11-1.98. More... SNPs rs11171856 of TIM gene was associated with BPDII risk. SNPs rs11171856 of TIM gene was associated with BPDII risk. Positive

SNP related genes (count: 3)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ARHGEF5 Rho guanine nucleotide exchange factor (GEF) 5 7q35 1(1/0/0)
TIMELESS timeless circadian clock 12q13.3 3(0/3/0)
MIP major intrinsic protein of lens fiber 12q13 Mapped by Literature SNP

SNPs in LD with rs11171856 (count: 0) View in gBrowse (chr12:56448035..56448035 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)