SNP Report

Basic Info

Name	rs11171856 dbSNP Ensembl
Location	chr12:56448035 - 56448035(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.368411
Functional Annotation	downstream_gene_variant; intron_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000257979, ENST00000555551); intron_variant(ENST00000229201, ENST00000553532)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Dmitrzak-Weglarz, M. P., 2014	C/T		MD (BPD and UPD): P-value=0.0089, FDR=0.1492, OR=1.23, 95%CI...... MD (BPD and UPD): P-value=0.0089, FDR=0.1492, OR=1.23, 95%CI=1.05-1.44; BPDII: P-value=0.0074, FDR=0.1035, OR=1.48, 95%CI=1.11-1.98. More...	SNPs rs11171856 of TIM gene was associated with BPDII risk. SNPs rs11171856 of TIM gene was associated with BPDII risk.	Positive

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ARHGEF5	Rho guanine nucleotide exchange factor (GEF) 5	7q35	1(1/0/0)
TIMELESS	timeless circadian clock	12q13.3	3(0/3/0)
MIP	major intrinsic protein of lens fiber	12q13	Mapped by Literature SNP

SNPs in LD with rs11171856 (count: 0) View in gBrowse (chr12:56448035..56448035 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)