BDgene

SNP Report

Basic Info
Name rs11150863 dbSNP Ensembl
Location chr17:80558521 - 80558521(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.285743
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000306801, ENST00000544334, ENST00000570891, ENST00000573746, ENST00000574767, ENST00000577161); NMD_transcript_variant(ENST00000574767); non_coding_transcript_variant(ENST00000573746, ENST00000577161)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Bergen, S. E.,2012 A logistic regression: P-value > E-05 logistic regression: P-value > E-05 No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NPTX1 neuronal pentraxin I 17q25.3 2(1/1/0)
RPTOR regulatory associated protein of MTOR, complex 1 17q25.3 2(1/1/0)

SNPs in LD with rs11150863 (count: 30) View in gBrowse (chr17:80541410..80730099 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 30)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Bergen, S. E.,2012 logistic regression:for SZ new sample, OR=0.78, P-value = 3.49E-06 No significant association was observed in SZ. Negative

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
To view this website normally, please make sure to allow Flash to run from the local filesystem in the security settings panel.
Last update: March 31, 2016