SNP Report

Basic Info
Name rs11090591 dbSNP Ensembl
Location chr22:29981324 - 29981324(1)
Variant Alleles A/C
Ancestral Allele A
Minor Allele C
Minor Allele Frequence 0.101438
Functional Annotation downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000480776, ENST00000495098); intron_variant(ENST00000323630, ENST00000333027, ENST00000351488, ENST00000401950, ENST00000406629, ENST00000415511, ENST00000445401); non_coding_transcript_exon_variant(ENST00000624945); non_coding_transcript_variant(ENST00000415511, ENST00000624945)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 C/A P-value=2.37E-06 P-value=2.37E-06 Top 132 SNPs (showing suggestive association to BD in our CA...... Top 132 SNPs (showing suggestive association to BD in our CAMH family cohort: p<0.0001). More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
MTMR3 myotubularin related protein 3 22q12.2 1(0/1/0)

SNPs in LD with rs11090591 (count: 31) View in gBrowse (chr22:29853358..30179174 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 31)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)