BDgene

SNP Report

Basic Info
Name rs11073768 dbSNP Ensembl
Location chr15:88222133 - 88222133(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.221446
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000317501, ENST00000355254, ENST00000357724, ENST00000360948, ENST00000394480, ENST00000540489, ENST00000557856, ENST00000558676, ENST00000559188, ENST00000626019, ENST00000629765)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Athanasiu, L.,2011 A/G Allelic association: OR=0.757, P-value = 1.55E-01, P-value(t...... Allelic association: OR=0.757, P-value = 1.55E-01, P-value(trend)=1.55E-01 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NTRK3 neurotrophic tyrosine kinase, receptor, type 3 15q24-q25 2(2/0/0)

SNPs in LD with rs11073768 (count: 37) View in gBrowse (chr15:88210486..88247146 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 37)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016