BDgene

SNP Report

Basic Info
Name rs10982256 dbSNP Ensembl
Location chr9:114498554 - 114498554(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.38758
Functional Annotation downstream_gene_variant; intron_variant.
Consequence to Transcript downstream_gene_variant(ENST00000480518); intron_variant(ENST00000265134, ENST00000362057, ENST00000374057)
No. of Studies 3 (Positive: 1; Negative: 0; Trend: 2)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 3)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Jiang, Y.,2011 Non-weighted test under H0: P-value(additive)=0.00000882, P-...... Non-weighted test under H0: P-value(additive)=0.00000882, P-value(dominant)=0.000585, P-value(recessive)=0.000121; weighted test under H'0: P-value(additive)=0.00000529, P-value(dominant)=0.000351, P-value(recessive)=0.000201; logistic regression: P-value(additive)=0.0000105, P-value(dominant)=0.000411, P-value(recessive)=0.000239 More... Suggestive association was found. Suggestive association was found. Trend
The Wellcome Trust Case Control Consortium, 2007 T/C T Genotypic P-value = 4.41E-05; Heterozygote OR (95%CI)=1.26 ...... Genotypic P-value = 4.41E-05; Heterozygote OR (95%CI)=1.26 (1.08-1.47); Homozygote OR (95%CI)=1.47 (1.24-1.74) More... showing moderate evidence of association with BD showing moderate evidence of association with BD Trend
Ollila, H. M.,2009 C/T FBAT: P-value = 0.009756 FBAT: P-value = 0.009756 Significant association was observed Significant association was observed Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DFNB31 deafness, autosomal recessive 31 9q32 3(2/1/0)

SNPs in LD with rs10982256 (count: 18) View in gBrowse (chr9:114480295..114513773 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 18)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)