SNP Report

Basic Info
Name rs10743152 dbSNP Ensembl
Location chr11:2174751 - 2174751(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.279952
Functional Annotation downstream_gene_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000584128); upstream_gene_variant(ENST00000324155, ENST00000333684, ENST00000352909, ENST00000381168, ENST00000381175, ENST00000381178)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2008 (b) A/G A Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.049, Gene-wide P-value = 0.2058 (P values were based on permutation for all SNPs in each gene). More... Positive

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TH tyrosine hydroxylase 11p15.5 16(4/12/0)
MIR4686 microRNA 4686 11 Mapped by Literature SNP

SNPs in LD with rs10743152 (count: 4) View in gBrowse (chr11:2172367..2174751 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 4)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)