SNP Report

Basic Info
Name rs1064395 dbSNP Ensembl
Location chr19:19250926 - 19250926(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.247204
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant; upstream_gene_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000252575); downstream_gene_variant(ENST00000291481, ENST00000585410, ENST00000586064, ENST00000588231); upstream_gene_variant(ENST00000624068)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Cichon, S.,2011 A For GWAS, P-value = 0.00000342, OR=1.53, for Replication I, ...... For GWAS, P-value = 0.00000342, OR=1.53, for Replication I, P-value = 0.000461, OR=1.23, for combined sample(GWAS+Replication I), P-value = 0.0000000302, OR=1.31 More... Suggestive association was found. Suggestive association was found. Trend

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
HAPLN4 hyaluronan and proteoglycan link protein 4 19p13.1 Mapped by Literature SNP
NCAN neurocan 19p12 1(1/0/0)

SNPs in LD with rs1064395 (count: 24) View in gBrowse (chr19:19248691..19449254 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 24)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)