SNP Report

Basic Info
Name rs1054190 dbSNP Ensembl
Location chr3:119817871 - 119817871(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.0599042
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000337940, ENST00000393716, ENST00000466380); downstream_gene_variant(ENST00000264235); non_coding_transcript_exon_variant(ENST00000493757); non_coding_transcript_variant(ENST00000493757)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Saus, E.,2010 C/T association analyses with diagnosis: codominant P-value = 0....... association analyses with diagnosis: codominant P-value = 0.993, dominant P-value = 0.997, recessive P-value = 0.907, additive P-value = 0.973 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GSK3B glycogen synthase kinase 3 beta 3q13.3 8(0/8/0)
NR1I2 nuclear receptor subfamily 1, group I, member 2 3q12-q13.3 Mapped by Literature SNP

SNPs in LD with rs1054190 (count: 0) View in gBrowse (chr3:119817871..119817871 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Saus, E.,2010 association analyses with diagnosis:codominant P-value = 0.521, dominant P-value = 0.393, recessive P-value = 0.547, additive P-value = 0.506 No significant association was observed. Negative