SNP Report

Basic Info

Name	rs10515827 dbSNP Ensembl
Location	chr5:161327950 - 161327950(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.0557109
Functional Annotation	downstream_gene_variant; intron_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000612710); intron_variant(ENST00000274547, ENST00000353437, ENST00000393959, ENST00000517547, ENST00000517901, ENST00000520240)
No. of Studies	2 (Positive: 2; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 2)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Perlis, 2008			Mean X²=8.1, P-value = 0.01 in gene-based associa...... Mean X²=8.1, P-value = 0.01 in gene-based association tests More...		Positive
Shi, J., 2008 (b)	A/G	A	Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0206, Gene-wide P-value = 0.1409 (P values were based on permutation for all SNPs in each gene). More...		Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GABRB2	gamma-aminobutyric acid (GABA) A receptor, beta 2	5q34	1(1/0/0)

SNPs in LD with rs10515827 (count: 1) View in gBrowse (chr5:161327950..161414197 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs17521569		intron_variant	0.815[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)