BDgene

SNP Report

Basic Info
Name rs10462021 dbSNP Ensembl
Location chr1:7837073 - 7837073(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.121006
Functional Annotation missense_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Polyphen Annotation: benign(ENST00000361923, ENST00000377532, ENST00000613533, ENST00000614998)
SIFT Annotation: tolerated(ENST00000361923, ENST00000377532, ENST00000613533, ENST00000614998)
Consequence to Transcript missense_variant(ENST00000361923, ENST00000377532, ENST00000613533, ENST00000614998); non_coding_transcript_exon_variant(ENST00000494684); non_coding_transcript_variant(ENST00000494684)
No. of Studies 2 (Positive: 0; Negative: 2; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Mansour, H. A., 2006 C/T TDT P-value = 0.68 in the samples combined, Pittsburgh Trend...... TDT P-value = 0.68 in the samples combined, Pittsburgh Trends test=0.281 for BDI More... The loci tested did not show significant differences between...... The loci tested did not show significant differences between sites in the transmission rate. More... Negative
Mansour, H. A.,2009 Single SNP-based analyses: Trends test P-value = 0.334 in BP...... Single SNP-based analyses: Trends test P-value = 0.334 in BPI More... No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PER3 period circadian clock 3 1p36.23 7(3/4/0)

SNPs in LD with rs10462021 (count: 4) View in gBrowse (chr1:7792859..7837073 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 4)


Overlap with SZ from cross-disorder studies (count: 2)
Reference Statistical Result Description Result Category
Mansour, H. A.,2009 Single SNP-based analyses:Trends test P-value = 0.036 in SZ Significant association was observed Positive
Mansour, H. A., 2006 TDT P-value = 0.485, Trends test=0.913 for Pittsburgh SZ/SZA Negative

Overlap with MDD from cross-disorder studies (count: 0)