BDgene

SNP Report

Basic Info
Name rs9823996 dbSNP Ensembl
Location chr3:7202822 - 7202822(1)
Variant Alleles C/G
Ancestral Allele C
Minor Allele G
Minor Allele Frequence 0.232029
Functional Annotation intron_variant; NMD_transcript_variant.
Consequence to Transcript intron_variant(ENST00000357716, ENST00000389335, ENST00000389336, ENST00000435689, ENST00000440923, ENST00000448328, ENST00000467425, ENST00000486284); NMD_transcript_variant(ENST00000389335, ENST00000435689, ENST00000440923, ENST00000467425)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kandaswamy R., 2014 G/C P-value=0.028 P-value=0.028 Significantly associated with BD. Significantly associated with BD. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GRM7 glutamate receptor, metabotropic 7 3p26-p25 3(2/1/0)

SNPs in LD with rs9823996 (count: 11) View in gBrowse (chr3:7179326..7208308 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 11)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016