SNP Report

Basic Info

Name	rs9722 dbSNP Ensembl
Location	chr21:46599326 - 46599326(1)
Variant Alleles	G/A
Ancestral Allele	A
Minor Allele	A
Minor Allele Frequence	0.270567
Functional Annotation	3_prime_UTR_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000291700, ENST00000367071, ENST00000397648)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Roche, S., 2007	T/C		TDT allelic P-value = 0.414, X⁵=0.667 in BPI; P-...... TDT allelic P-value = 0.414, X⁵=0.667 in BPI; P-value = 0.108, X⁵=2.579 in BPI and psychosis More...		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
S100B	S100 calcium binding protein B	21q22.3	2(1/1/0)

SNPs in LD with rs9722 (count: 6) View in gBrowse (chr21:46586296..46602974 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs2839344	downstream_gene_variant	1.0[CEU]
rs2839356	intron_variant	1.0[CEU]
rs2839346	downstream_gene_variant	1.0[CEU]
rs2239575	intron_variant	1.0[CEU]
rs2839357	intron_variant; upstream_gene_variant	1.0[CEU]
rs2154576		1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)