BDgene

SNP Report

Basic Info
Name rs9643297 dbSNP Ensembl
Location chr8:133471452 - 133471452(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.477037
Functional Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000518298, ENST00000519435, ENST00000519924, ENST00000520020, ENST00000523634, ENST00000523855); intron_variant(ENST00000399640, ENST00000517668, ENST00000521180, ENST00000522204, ENST00000522652, ENST00000523854); non_coding_transcript_variant(ENST00000522204)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Perlis, 2008 Mean X2=7.61, P-value = 0.02 in gene-based associ...... Mean X2=7.61, P-value = 0.02 in gene-based association tests More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 8q24.22 4(3/0/1)

SNPs in LD with rs9643297 (count: 0) View in gBrowse (chr8:133471452..133471452 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)