SNP Report

Basic Info

Name	rs9567552 dbSNP Ensembl
Location	chr13:32316090 - 32316090(1)
Variant Alleles	G/T
Ancestral Allele	G
Minor Allele	T
Minor Allele Frequence	0.216454
Functional Annotation	intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000380152, ENST00000530893, ENST00000544455, LRG_293t1); non_coding_transcript_variant(ENST00000530893); upstream_gene_variant(ENST00000345108, ENST00000533490, ENST00000614259)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Tesli, M.,2010	T/G		CMH test: P-value(Bonferroni corrected P-value)=0.00043(0.00...... CMH test: P-value(Bonferroni corrected P-value)=0.00043(0.0043), OR (95% CI)=1.32(1.13-1.54) for BD. More...	Significant association was found in BD. Significant association was found in BD.	Positive

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ZAR1L	zygote arrest 1-like	13q13.1	Mapped by Literature SNP
BRCA2	breast cancer 2, early onset	13q12-q13	1(1/0/0)

SNPs in LD with rs9567552 (count: 1) View in gBrowse (chr13:32316090..32316435 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs1799943		5_prime_UTR_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant	0.95[CEU]

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Tesli, M.,2010	CMH test:P-value = 0.52, OR (95% CI)=1.05(0.91-1.20) for SCZ.	No significant association was observed.	Negative

Overlap with MDD from cross-disorder studies (count: 0)