SNP Report

Basic Info
Name rs9567552 dbSNP Ensembl
Location chr13:32316090 - 32316090(1)
Variant Alleles G/T
Ancestral Allele G
Minor Allele T
Minor Allele Frequence 0.216454
Functional Annotation intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000380152, ENST00000530893, ENST00000544455, LRG_293t1); non_coding_transcript_variant(ENST00000530893); upstream_gene_variant(ENST00000345108, ENST00000533490, ENST00000614259)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Tesli, M.,2010 T/G CMH test: P-value(Bonferroni corrected P-value)=0.00043(0.00...... CMH test: P-value(Bonferroni corrected P-value)=0.00043(0.0043), OR (95% CI)=1.32(1.13-1.54) for BD. More... Significant association was found in BD. Significant association was found in BD. Positive

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ZAR1L zygote arrest 1-like 13q13.1 Mapped by Literature SNP
BRCA2 breast cancer 2, early onset 13q12-q13 1(1/0/0)

SNPs in LD with rs9567552 (count: 1) View in gBrowse (chr13:32316090..32316435 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Tesli, M.,2010 CMH test:P-value = 0.52, OR (95% CI)=1.05(0.91-1.20) for SCZ. No significant association was observed. Negative

Overlap with MDD from cross-disorder studies (count: 0)