BDgene

SNP Report

Basic Info
Name rs9554752 dbSNP Ensembl
Location chr13:101073961 - 101073961(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.352436
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000251127)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Liu, X., 2016 T/C P-value=6.0E-06, OR=1.65 in the BD+ED vs. CTL analysis P-value=6.0E-06, OR=1.65 in the BD+ED vs. CTL analysis Association to NALCN on chromosome 13q33.1 was observed most...... Association to NALCN on chromosome 13q33.1 was observed most prominently for the BD+ED vs. CTL comparison (peak p=6.0E-6,OR=1.7 for rs9554752). More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NALCN sodium leak channel, non selective 13q32.3 2(0/2/0)

SNPs in LD with rs9554752 (count: 0) View in gBrowse (chr13:101073961..101073961 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016