SNP Report

Basic Info

Name	rs9490550 dbSNP Ensembl
Location	chr6:122783162 - 122783162(1)
Variant Alleles	G/T
Ancestral Allele	G
Minor Allele	T
Minor Allele Frequence	0.329073
Functional Annotation	downstream_gene_variant; intron_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000356535); intron_variant(ENST00000368444)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Iwayama, Y., 2010	T/G		P-value for allele test is 0.0636, p-value for genotype test...... P-value for allele test is 0.0636, p-value for genotype test is 0.1713, p-value is 0.6244 after correction by permutation test. More...		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
FABP7	fatty acid binding protein 7, brain	6q22-q23	1(1/0/0)

SNPs in LD with rs9490550 (count: 1) View in gBrowse (chr6:122783060..122783162 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs9490549		downstream_gene_variant; intron_variant	1.0[CHB]; 0.968[CHD]; 0.93[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)