BDgene

SNP Report

Basic Info
Name rs9456 dbSNP Ensembl
Location chr16:8783734 - 8783734(1)
Variant Alleles T/A
Ancestral Allele T
Minor Allele A
Minor Allele Frequence 0.177516
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000268251, ENST00000396600); downstream_gene_variant(ENST00000425191, ENST00000566590, ENST00000567812, ENST00000569156); intron_variant(ENST00000564869); non_coding_transcript_variant(ENST00000564869)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2008 (b) A/T A Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0049, Gene-wide P-value = 0.0859 (P values were based on permutation for all SNPs in each gene). More... Positive

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TMEM186 transmembrane protein 186 16p13.2 Mapped by Literature SNP
ABAT 4-aminobutyrate aminotransferase 16p13.2 Mapped by Literature SNP

SNPs in LD with rs9456 (count: 14) View in gBrowse (chr16:8783734..8863633 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 14)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016