BDgene

SNP Report

Basic Info
Name rs943194 dbSNP Ensembl
Location chr10:22620913 - 22620913(1)
Variant Alleles T/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.405751
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000376573, ENST00000545335)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Jamra, R. A., 2006 (a) T/G ARMITAGE P-value = 0.484 for BPAD ARMITAGE P-value = 0.484 for BPAD In the single marker analysis, none of the analyzed variants...... In the single marker analysis, none of the analyzed variants revealed significant association to disease status, neither for schizophrenia nor for BPAD. More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PIP4K2A phosphatidylinositol-5-phosphate 4-kinase, type II, alpha 10p12.2 4(1/3/0)

SNPs in LD with rs943194 (count: 0) View in gBrowse (chr10:22620913..22620913 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Jamra, R. A., 2006 (a) ARMITAGE P-value = 0.064 for Schizophrenia In the single marker analysis, none of the analyzed variants revealed significant association to disease status, neither for schizophrenia nor for BPAD. Negative

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016