SNP Report

Basic Info
Name rs9401594 dbSNP Ensembl
Location chr6:122782340 - 122782340(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.399561
Functional Annotation 3_prime_UTR_variant; intron_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000356535); intron_variant(ENST00000368444)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Iwayama, Y., 2010 T/C P-value for allele test is 0.3594, p-value for genotype test...... P-value for allele test is 0.3594, p-value for genotype test is 0.6554, p-value is 0.9976 after correction by permutation test. More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
FABP7 fatty acid binding protein 7, brain 6q22-q23 1(1/0/0)

SNPs in LD with rs9401594 (count: 1) View in gBrowse (chr6:122780502..122782340 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)