SNP Report

Basic Info

Name	rs9392 dbSNP Ensembl
Location	chr16:3725168 - 3725168(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.252396
Functional Annotation	3_prime_UTR_variant; downstream_gene_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000262367); downstream_gene_variant(ENST00000382070)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	YES

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Crisafulli, C.,2012	A/G		Association analysis: genotype P-value = 0.55, chi square=3....... Association analysis: genotype P-value = 0.55, chi square=3.02; allele P-value = 0.36, chi square=2.06 More...	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CREBBP	CREB binding protein	16p13.3	1(0/1/0)

SNPs in LD with rs9392 (count: 1) View in gBrowse (chr16:3720728..3725168 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs2191416		downstream_gene_variant; upstream_gene_variant	0.858[CHB]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Crisafulli, C.,2012	Association analysis:genotype P-value = >0.05;allele P-value > 0.05	No significant association was observed in MDD.	Negative