BDgene

SNP Report

Basic Info
Name rs9392 dbSNP Ensembl
Location chr16:3725168 - 3725168(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.252396
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000262367); downstream_gene_variant(ENST00000382070)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Crisafulli, C.,2012 A/G Association analysis: genotype P-value = 0.55, chi square=3....... Association analysis: genotype P-value = 0.55, chi square=3.02; allele P-value = 0.36, chi square=2.06 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CREBBP CREB binding protein 16p13.3 1(0/1/0)

SNPs in LD with rs9392 (count: 1) View in gBrowse (chr16:3720728..3725168 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Crisafulli, C.,2012 Association analysis:genotype P-value = >0.05;allele P-value > 0.05 No significant association was observed in MDD. Negative