SNP Report
Basic Info
| Name |
rs9326555
dbSNP
Ensembl
|
| Location |
chr1:147550532 - 147550532(1) |
| Variant Alleles |
C/G |
| Ancestral Allele |
C |
| Minor Allele |
G |
| Minor Allele Frequence |
0.112021 |
| Functional Annotation |
intron_variant.
|
| Consequence to Transcript |
intron_variant(ENST00000234739) |
| No. of Studies |
1 (Positive: 0; Negative: 1; Trend: 0) |
| Source |
Literature |
| Overlap with SZ? |
YES
|
|---|
| Overlap with MDD? |
YES
|
|---|
SNP related studies (count: 1)
SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 3)
| rs_ID |
Literature-origin SNPs with LD |
Functional Annotation |
r2[population] |
|
rs594206
|
|
intron_variant |
1.0[CHB]; 1.0[CHD]; 1.0[JPT]
|
|
rs594132
|
|
intron_variant |
1.0[JPT]
|
|
rs17160413
|
|
intron_variant |
1.0[CHB]; 1.0[JPT]
|
Overlap with SZ from cross-disorder studies (count: 1)
| Reference |
Statistical Result |
Description |
Result Category |
| Li, J.,2011(b) |
Third-Stage Sample:for SZ, allele association P-value = 0.15, OR(95%CI)=1.16(0.94-1.43);Combined Third-Stage Sample, allele association P-value = 0.0000153, OR(98%CI)=1.27(1.14-1.41) |
Significant association was observed in SZ. |
Positive |
Overlap with MDD from cross-disorder studies (count: 1)
| Reference |
Statistical Result |
Description |
Result Category |
| Li, J.,2011(b) |
Third-Stage Sample:for MDD, allele association P-value = 0.99, OR(95%CI)=1.00(0.81-1.23) |
No significant association was observed. |
Negative
|
