SNP Report

Basic Info
Name rs9324684 dbSNP Ensembl
Location chr5:151209052 - 151209052(1)
Variant Alleles G/C
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.387181
Functional Annotation intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000355417, ENST00000521308, ENST00000522179); non_coding_transcript_variant(ENST00000521308, ENST00000522179); upstream_gene_variant(ENST00000518189, ENST00000522964, ENST00000523466, ENST00000524344)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Hattori, E.,2009 In GWAS: Allelic P-value = 0.00762, Genotypic P-value = 0.03...... In GWAS: Allelic P-value = 0.00762, Genotypic P-value = 0.03259, Recessive P-value = 0.02601, HWE P-value = 0.79472; in Follow-up study: MAF=0.18, Allelic P-value = 0.0229, Allelic Q-value=0.5154, HWE P-value = 0.88843 More... Significant association was observed in both GWAS and Follow...... Significant association was observed in both GWAS and Follow-up study. More... Positive

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CCDC69 coiled-coil domain containing 69 5q33.1 1(1/0/0)
GM2A GM2 ganglioside activator 5q33.1 Mapped by Literature SNP

SNPs in LD with rs9324684 (count: 2) View in gBrowse (chr5:151209052..151215241 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)