SNP Report

Basic Info

Name	rs9324684 dbSNP Ensembl
Location	chr5:151209052 - 151209052(1)
Variant Alleles	G/C
Ancestral Allele	C
Minor Allele	C
Minor Allele Frequence	0.387181
Functional Annotation	intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000355417, ENST00000521308, ENST00000522179); non_coding_transcript_variant(ENST00000521308, ENST00000522179); upstream_gene_variant(ENST00000518189, ENST00000522964, ENST00000523466, ENST00000524344)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Hattori, E.,2009			In GWAS: Allelic P-value = 0.00762, Genotypic P-value = 0.03...... In GWAS: Allelic P-value = 0.00762, Genotypic P-value = 0.03259, Recessive P-value = 0.02601, HWE P-value = 0.79472; in Follow-up study: MAF=0.18, Allelic P-value = 0.0229, Allelic Q-value=0.5154, HWE P-value = 0.88843 More...	Significant association was observed in both GWAS and Follow...... Significant association was observed in both GWAS and Follow-up study. More...	Positive

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CCDC69	coiled-coil domain containing 69	5q33.1	1(1/0/0)
GM2A	GM2 ganglioside activator	5q33.1	Mapped by Literature SNP

SNPs in LD with rs9324684 (count: 2) View in gBrowse (chr5:151209052..151215241 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs12521757		downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CHB]; 0.932[CHD]; 1.0[JPT]
rs979455		downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CHB]; 0.932[CHD]; 1.0[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)