SNP Report

Basic Info

Name	rs931781 dbSNP Ensembl
Location	chr15:48662707 - 48662707(1)
Variant Alleles	A/T
Ancestral Allele	T
Minor Allele	A
Minor Allele Frequence	0.217652
Functional Annotation	non_coding_transcript_exon_variant; non_coding_transcript_variant.
Consequence to Transcript	non_coding_transcript_exon_variant(ENST00000616350); non_coding_transcript_variant(ENST00000616350)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Djurovic, S.,2010			Combined analysis: for TOP Norway (discovery sample): P-valu...... Combined analysis: for TOP Norway (discovery sample): P-value = 0.000937, OR=0.61 More...	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
FBN1	fibrillin 1	15q21.1	2(0/2/0)

SNPs in LD with rs931781 (count: 25) View in gBrowse (chr15:48656881..48697690 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs893160	downstream_gene_variant	0.95[CEU]; 0.884[TSI]
rs2126905		0.809[CEU]
rs10851469		0.899[CEU]
rs2045889		0.896[CEU]
rs1995620		0.902[CEU]; 0.917[TSI]
rs8038489	upstream_gene_variant	1.0[CEU]; 0.971[TSI]
rs2045891		0.902[CEU]; 0.942[TSI]
rs12910178		0.898[CEU]
rs8038940		0.902[CEU]; 0.885[TSI]
rs12442299		0.95[CEU]; 0.971[TSI]
rs2413910		0.902[CEU]
rs7173410	downstream_gene_variant	1.0[CEU]
rs4775771		1.0[CEU]
rs7166445	downstream_gene_variant	0.831[TSI]
rs931782	non_coding_transcript_exon_variant; non_coding_transcript_variant	1.0[CEU]
rs12907144		0.853[CEU]; 0.941[TSI]
rs1478347		0.892[CEU]
rs10851470		0.902[CEU]; 0.941[TSI]
rs1564187		0.902[CEU]; 0.941[TSI]
rs2043682	upstream_gene_variant	1.0[CEU]
rs1506523		0.902[CEU]
rs7173026	downstream_gene_variant	1.0[CEU]
rs1478346		0.87[CEU]
rs1857910		0.95[CEU]; 0.857[TSI]
rs2099562	downstream_gene_variant	1.0[CEU]; 0.971[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)