SNP Report

Basic Info
Name rs885834 dbSNP Ensembl
Location chr10:49607466 - 49607466(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.368211
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000339797, ENST00000374115)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2007 A/G TDT P-value = 0.89 of Allelic Association With Bipolar Disor...... TDT P-value = 0.89 of Allelic Association With Bipolar Disorder in the Combined Sample More... Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CHAT choline O-acetyltransferase 10q11.2 1(0/1/0)
SLC18A3 solute carrier family 18 (vesicular acetylcholine transporter), member 3 10q11.2 Mapped by Literature SNP

SNPs in LD with rs885834 (count: 0) View in gBrowse (chr10:49607466..49607466 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)