BDgene

SNP Report

Basic Info
Name rs884664 dbSNP Ensembl
Location chr1:154731249 - 154731249(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.351238
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000271915, ENST00000358505, ENST00000361147, ENST00000618040)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Koefoed, P.,2011 Chi-square test: P-value = 0.01 Chi-square test: P-value = 0.01 Significant association was found in genotype association. Significant association was found in genotype association. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
KCNN3 potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 3 1q21.3 7(1/6/0)

SNPs in LD with rs884664 (count: 1) View in gBrowse (chr1:154731249..154731483 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)