SNP Report

Basic Info

Name	rs8636 dbSNP Ensembl
Location	chr20:10307094 - 10307094(1)
Variant Alleles	T/C
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.253794
Functional Annotation	3_prime_UTR_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000254976, ENST00000304886); intron_variant(ENST00000421143, ENST00000453544); non_coding_transcript_exon_variant(ENST00000495883); non_coding_transcript_variant(ENST00000421143, ENST00000453544, ENST00000495883)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Etain, B., 2010	C/T		P-value = 0.817, OR=0.96 between subjects affected with earl...... P-value = 0.817, OR=0.96 between subjects affected with early-onset bipolar disorder (N= 197) and healthy controls (N= 136). More...	no association was observed. no association was observed.	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SNAP25-AS1	SNAP25 antisense RNA 1	20p12.2	Mapped by Literature SNP
SNAP25	synaptosomal-associated protein, 25kDa	20p12-p11.2	2(2/0/0)

SNPs in LD with rs8636 (count: 2) View in gBrowse (chr20:10305665..10307094 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs3746544		3_prime_UTR_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	1.0[CEU]; 0.974[TSI]
rs4813925		intron_variant; non_coding_transcript_variant	1.0[CEU]; 0.974[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)