SNP Report

Basic Info
Name rs8636 dbSNP Ensembl
Location chr20:10307094 - 10307094(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.253794
Functional Annotation 3_prime_UTR_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000254976, ENST00000304886); intron_variant(ENST00000421143, ENST00000453544); non_coding_transcript_exon_variant(ENST00000495883); non_coding_transcript_variant(ENST00000421143, ENST00000453544, ENST00000495883)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Etain, B., 2010 C/T P-value = 0.817, OR=0.96 between subjects affected with earl...... P-value = 0.817, OR=0.96 between subjects affected with early-onset bipolar disorder (N= 197) and healthy controls (N= 136). More... no association was observed. no association was observed. Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SNAP25-AS1 SNAP25 antisense RNA 1 20p12.2 Mapped by Literature SNP
SNAP25 synaptosomal-associated protein, 25kDa 20p12-p11.2 2(2/0/0)

SNPs in LD with rs8636 (count: 2) View in gBrowse (chr20:10305665..10307094 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)