SNP Report

Basic Info
Name rs8177435 dbSNP Ensembl
Location chr5:151024822 - 151024822(1)
Variant Alleles G/T
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.410743
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000625178); intron_variant(ENST00000388825, ENST00000517973, ENST00000519214, ENST00000521650, ENST00000521722, ENST00000614343, ENST00000622181); NMD_transcript_variant(ENST00000519214); non_coding_transcript_variant(ENST00000521722); upstream_gene_variant(ENST00000520059, ENST00000520597, ENST00000521632)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Fullerton, J. M.,2010 G Allelic association: X2=0.806, P-value = 0.369, O...... Allelic association: X2=0.806, P-value = 0.369, OR=1.105 for broad model; X2=0.281, P-value = 0.596, OR=1.067 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GPX3 glutathione peroxidase 3 5q33.1 1(1/0/0)

SNPs in LD with rs8177435 (count: 0) View in gBrowse (chr5:151024822..151024822 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)