SNP Report

Basic Info

Name	rs816363 dbSNP Ensembl
Location	chr12:117222662 - 117222662(1)
Variant Alleles	C/G
Ancestral Allele	G
Minor Allele	C
Minor Allele Frequence	0.456669
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000317775, ENST00000338101, ENST00000344089, ENST00000618760)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Yosifova, A.,2009	C/G		Allelic association: P-value = 0.78 Allelic association: P-value = 0.78	No significant association was observed No significant association was observed	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NOS1	nitric oxide synthase 1 (neuronal)	12q24.22	8(2/5/1)

SNPs in LD with rs816363 (count: 5) View in gBrowse (chr12:117222662..117258729 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs2682825	intron_variant; upstream_gene_variant	0.876[CEU]
rs816353	intron_variant; upstream_gene_variant	0.876[CEU]
rs1093329	intron_variant	0.876[CEU]
rs1093330	intron_variant	0.876[CEU]
rs845820	intron_variant; upstream_gene_variant	0.876[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)