SNP Report

Basic Info
Name rs8099939 dbSNP Ensembl
Location chr19:42016956 - 42016956(1)
Variant Alleles T/G
Ancestral Allele T
Minor Allele G
Minor Allele Frequence 0.327476
Functional Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000594528); intron_variant(ENST00000262895, ENST00000301218, ENST00000454993, ENST00000593562); non_coding_transcript_variant(ENST00000454993)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Yosifova, A.,2011 G>T GWAS P-value = 0.00000146, OR(95%CI)=2.53(1.65-3.88); Replic...... GWAS P-value = 0.00000146, OR(95%CI)=2.53(1.65-3.88); Replication P-value = 0.097, OR(95%CI)=1.45(0.90-2.34); Mantel-Haenszel P-value = 0.00000212, OR(95%CI)=1.95(1.43-2.67) More... Suggestive association was found. Suggestive association was found. Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GRIK5 glutamate receptor, ionotropic, kainate 5 19q13.2 2(1/0/1)

SNPs in LD with rs8099939 (count: 0) View in gBrowse (chr19:42016956..42016956 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)