SNP Report

Basic Info

Name	rs8042197 dbSNP Ensembl
Location	chr15:48656094 - 48656094(1)
Variant Alleles	C/T
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.302915
Functional Annotation	downstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000558061)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Djurovic, S.,2010			Combined analysis: for TOP Norway (discovery sample): P-valu...... Combined analysis: for TOP Norway (discovery sample): P-value = 0.000478, OR=0.59 More...	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
FBN1	fibrillin 1	15q21.1	2(0/2/0)

SNPs in LD with rs8042197 (count: 16) View in gBrowse (chr15:48656094..48695522 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs4775771		0.902[CEU]
rs7166445	downstream_gene_variant	0.847[CEU]; 0.938[TSI]
rs1564187		0.827[TSI]
rs8038489	upstream_gene_variant	0.902[CEU]; 0.86[TSI]
rs1857910		0.949[CEU]; 0.906[TSI]
rs2099562	downstream_gene_variant	0.901[CEU]; 0.86[TSI]
rs1995620		0.806[CEU]; 0.812[TSI]
rs893160	downstream_gene_variant	0.949[CEU]; 0.94[TSI]
rs12442299		0.849[CEU]; 0.86[TSI]
rs2045891		0.828[TSI]
rs12907144		0.827[TSI]
rs7173410	downstream_gene_variant	0.895[CEU]
rs931782	non_coding_transcript_exon_variant; non_coding_transcript_variant	0.902[CEU]
rs10851470		0.827[TSI]
rs7173026	downstream_gene_variant	0.901[CEU]
rs2043682	upstream_gene_variant	0.899[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)