SNP Report

Basic Info

Name	rs7909358 dbSNP Ensembl
Location	chrCHR_HG2191_PATCH:74930381 - 74930381(1)
Variant Alleles	G/A
Ancestral Allele	A
Minor Allele	A
Minor Allele Frequence	0.369609
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000287239, ENST00000372711, ENST00000372714, ENST00000372724, ENST00000372725, ENST00000628038, ENST00000628523, ENST00000629233, ENST00000629879, ENST00000630001)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Kuo, P. H., 2014			P-value=0.02090,Â OR=0.7, 95%CI=0.5-0.9 for the second stage P-value=0.02090,Â OR=0.7, 95%CI=0.5-0.9 for the second stage	The marker is identified to be associated with bipolar disor...... The marker is identified to be associated with bipolar disorder in the fine-mapping stage with P-value less than 0.05. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
KAT6B	K(lysine) acetyltransferase 6B	10q22.2	1(1/0/0)

SNPs in LD with rs7909358 (count: 7) View in gBrowse (chrCHR_HG2191_PATCH:74896019..74952096 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs1993006	intron_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs7899542	intron_variant	0.916[CHB]; 1.0[JPT]
rs736086	intron_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs10762649	intron_variant	1.0[CHB]; 1.0[JPT]
rs7095910	intron_variant	0.916[CHB]; 0.904[JPT]
rs4746248	intron_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs7097121	intron_variant	1.0[CHB]; 1.0[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)