SNP Report

Basic Info
Name rs7872515 dbSNP Ensembl
Location chr9:92060258 - 92060258(1)
Variant Alleles G/A
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.303514
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000262554, ENST00000482632, LRG_272t1); non_coding_transcript_variant(ENST00000482632)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Bergen, S. E.,2012 A logistic regression: P-value > E-05 logistic regression: P-value > E-05 No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RORA RAR-related orphan receptor A 15q21-q22 3(2/1/0)
SPTLC1 serine palmitoyltransferase, long chain base subunit 1 9q22.31 1(0/1/0)

SNPs in LD with rs7872515 (count: 15) View in gBrowse (chr9:91948734..92115554 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 15)

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Bergen, S. E.,2012 logistic regression:for SZ full sample, OR=0.73, P-value = 6.65E-06 No significant association was observed in SZ. Negative

Overlap with MDD from cross-disorder studies (count: 0)