BDgene

SNP Report

Basic Info
Name rs7867133 dbSNP Ensembl
Location chr9:72193094 - 72193094(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.401558
Functional Annotation intron_variant; NMD_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000238018, ENST00000358399, ENST00000376986, ENST00000475764, ENST00000545168); NMD_transcript_variant(ENST00000475764); upstream_gene_variant(ENST00000477618)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Scott, L. J.,2009 A/G NIMH/Pritzker: OR (95% CI)=1.23(1.04-1.44), P-value = 0.013;...... NIMH/Pritzker: OR (95% CI)=1.23(1.04-1.44), P-value = 0.013; GSK(complete sample): OR (95% CI)=1.39(1.19-1.63), P-value = 0.000033; 2-study meta-analysis: OR (95% CI)=1.31(1.17-1.47), P-value = 0.0000039; Heterogeneity: I2%=20, P-value = 0.26 More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GDA guanine deaminase 9q21.13 Mapped by Literature SNP

SNPs in LD with rs7867133 (count: 6) View in gBrowse (chr9:72193094..72211672 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 6)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016