BDgene

SNP Report

Basic Info
Name rs7619173 dbSNP Ensembl
Location chr3:181279171 - 181279171(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.492013
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000460739, ENST00000469278, ENST00000493116, ENST00000493521, ENST00000597347, ENST00000626948, ENST00000630482); non_coding_transcript_variant(ENST00000460739, ENST00000469278, ENST00000493116, ENST00000493521, ENST00000597347, ENST00000626948, ENST00000630482)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kuo, P. H., 2014 P-value=0.00002, OR=0.5, 95%CI=0.4-0.7 for the second stage...... P-value=0.00002, OR=0.5, 95%CI=0.4-0.7 for the second stage, combined P-value=2E-04 for the replication stage. More... The marker is identified to be associated with bipolar disor...... The marker is identified to be associated with bipolar disorder in the fine-mapping stage with P-value less than 0.05. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SOX2-OT SOX2 overlapping transcript 3q26.33 Mapped by Literature SNP

SNPs in LD with rs7619173 (count: 7) View in gBrowse (chr3:181086683..181318431 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 7)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)