SNP Report

Basic Info

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Scott, L. J.,2009	G/A		NIMH/Pritzker: OR (95% CI)=1.05(0.91-1.23), P-value = 0.49; ...... NIMH/Pritzker: OR (95% CI)=1.05(0.91-1.23), P-value = 0.49; GSK(reduced sample): OR (95% CI)=1.25(1.06-1.47), P-value = 0.0089; WTCCC: OR (95% CI)=1.17(1.09-1.26), P-value = 0.000015; 3-study meta-analysis: OR (95% CI)=1.16(1.09-1.24), P-value = 0.0000049; Heterogeneity: I²%=14, P-value = 0.31 More...		Trend

SNP related genes (count: 0)

SNPs in LD with rs7427021 (count: 29) View in gBrowse (chr3:164019813..164171596 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs10936393		0.821[CEU]
rs11710379		0.821[CEU]
rs13095640		0.821[CEU]
rs1376959		0.821[CEU]
rs1376957		0.844[CEU]
rs11709545		0.824[CEU]
rs11719068		0.824[CEU]
rs7618231		0.821[CEU]
rs7626385		0.821[CEU]
rs7637176		0.86[CEU]
rs7639261		0.949[CEU]
rs1349608		0.821[CEU]
rs2122378		0.824[CEU]
rs1993155		0.951[CEU]
rs10936410	downstream_gene_variant	0.866[CEU]
rs7650799		0.907[CEU]
rs10936403		0.884[CEU]
rs1349610		0.824[CEU]
rs6548325		0.821[CEU]
rs13084099		0.821[CEU]
rs10936388		0.821[CEU]
rs17424848		0.824[CEU]
rs10936412	upstream_gene_variant	0.866[CEU]
rs1321537		0.861[CEU]
rs13094074		0.907[CEU]
rs1551225		0.821[CEU]
rs12494671		0.824[CEU]
rs1817116		0.821[CEU]
rs12497669		0.902[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)