SNP Report

Basic Info
Name rs7126303 dbSNP Ensembl
Location chr11:13348988 - 13348988(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.373602
Functional Annotation intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000389707, ENST00000401424, ENST00000403290, ENST00000403510, ENST00000480685, ENST00000482049, ENST00000527998, ENST00000529050, ENST00000529388, ENST00000529825, ENST00000530357, ENST00000531665, ENST00000533520, ENST00000534544); non_coding_transcript_variant(ENST00000480685); upstream_gene_variant(ENST00000410230, ENST00000485918)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Mansour, H. A.,2009 A/G Single SNP-based analyses: Trends test P-value = 0.04 in BPI Single SNP-based analyses: Trends test P-value = 0.04 in BPI Significant association was observed Significant association was observed Positive

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ARNTL aryl hydrocarbon receptor nuclear translocator-like 11p15 7(5/2/0)
RN7SKP151 RNA, 7SK small nuclear pseudogene 151 11p15.2 Mapped by Literature SNP

SNPs in LD with rs7126303 (count: 2) View in gBrowse (chr11:13341268..13348988 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Mansour, H. A.,2009 Single SNP-based analyses:Trends test P-value = 0.738 in SZ No significant association was observed Negative

Overlap with MDD from cross-disorder studies (count: 0)