SNP Report

Basic Info
Name rs6990255 dbSNP Ensembl
Location chr8:34269430 - 34269430(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.0992412
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000522460); non_coding_transcript_variant(ENST00000522460)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Scott, L. J.,2009 T/C NIMH/Pritzker: OR (95% CI)=1.41(1.00-2.00), P-value = 0.048;...... NIMH/Pritzker: OR (95% CI)=1.41(1.00-2.00), P-value = 0.048; GSK(reduced sample): OR (95% CI)=1.28(0.91-1.81), P-value = 0.16; WTCCC: OR (95% CI)=1.33?(1.16-1.51), P-value = 0.000057; 3-study meta-analysis: OR (95% CI)=1.33(1.18-1.51), P-value = 0.0000058; Heterogeneity: I2%=0, P-value = 0.92 More... Trend

SNP related genes (count: 0)

SNPs in LD with rs6990255 (count: 1) View in gBrowse (chr8:34269430..34294974 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)