SNP Report

Basic Info

Name	rs6990255 dbSNP Ensembl
Location	chr8:34269430 - 34269430(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.0992412
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000522460); non_coding_transcript_variant(ENST00000522460)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Scott, L. J.,2009	T/C		NIMH/Pritzker: OR (95% CI)=1.41(1.00-2.00), P-value = 0.048;...... NIMH/Pritzker: OR (95% CI)=1.41(1.00-2.00), P-value = 0.048; GSK(reduced sample): OR (95% CI)=1.28(0.91-1.81), P-value = 0.16; WTCCC: OR (95% CI)=1.33?(1.16-1.51), P-value = 0.000057; 3-study meta-analysis: OR (95% CI)=1.33(1.18-1.51), P-value = 0.0000058; Heterogeneity: I²%=0, P-value = 0.92 More...		Trend

SNP related genes (count: 0)

SNPs in LD with rs6990255 (count: 1) View in gBrowse (chr8:34269430..34294974 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs2953928		intron_variant; non_coding_transcript_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)