SNP Report

Basic Info

Name	rs6981546 dbSNP Ensembl
Location	chr8:10080165 - 10080165(1)
Variant Alleles	T/G
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.492812
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000317173, ENST00000441698, ENST00000518255, ENST00000521209)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Ni, P., 2015			OR=0.7349, P-value=0.044 OR=0.7349, P-value=0.044	It had significantly different allele frequencies between BD...... It had significantly different allele frequencies between BDI patients and controls. More...	Positive

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
MSRA	methionine sulfoxide reductase A	8p23.1	Mapped by Literature SNP
MsrA	methionine sulfoxide reductase A	8p23.1	1(1/0/0)

SNPs in LD with rs6981546 (count: 21) View in gBrowse (chr8:10038509..10147857 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs814424	intron_variant	0.805[CHD]
rs7012221	intron_variant; upstream_gene_variant	0.952[CHB]; 0.857[JPT]
rs1521193		0.858[JPT]
rs814421	intron_variant	0.8[CHD]
rs4841279	intron_variant; non_coding_transcript_variant	0.815[JPT]
rs625218	intron_variant; upstream_gene_variant	0.828[CHB]; 0.841[CHD]; 0.908[JPT]
rs6983566	intron_variant	0.868[CHB]; 0.91[CHD]; 0.953[JPT]
rs11249969	intron_variant	0.868[CHB]; 0.91[CHD]; 0.953[JPT]
rs13250499	intron_variant	0.953[CHB]; 1.0[JPT]
rs13249013	intron_variant; non_coding_transcript_variant	0.813[JPT]
rs7832431	intron_variant	0.954[CHB]; 0.811[JPT]
rs2409632	intron_variant	0.954[CHB]; 0.953[JPT]
rs685218	intron_variant	0.858[JPT]
rs12545826	intron_variant	0.863[CHB]; 0.93[CHD]; 0.953[JPT]
rs3735823	intron_variant	0.868[CHB]; 0.952[JPT]
rs12680389	intron_variant; non_coding_transcript_variant	0.815[JPT]
rs4840462	intron_variant; upstream_gene_variant	0.91[CHB]; 0.953[JPT]
rs6997865	intron_variant	0.91[CHB]; 0.953[JPT]
rs12679328	intron_variant	0.908[CHB]; 0.951[JPT]
rs13261836	intron_variant	0.908[CHB]; 0.908[JPT]
rs11249970	intron_variant	0.951[CHB]; 0.904[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)