BDgene

SNP Report

Basic Info
Name rs6932590 dbSNP Ensembl
Location chr6:27281152 - 27281152(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.209065
Functional Annotation downstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000429945)
No. of Studies 2 (Positive: 1; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Steinberg, S.,2012 T Association results in bipolar disorder follow-up samples(7,...... Association results in bipolar disorder follow-up samples(7,333 cases; 43,779 controls):OR(95% CI) = 1.02 (0.98, 1.08),P-value = 0.33 More... No significant association was observed. No significant association was observed. Negative
Williams, H. J.,2011 Armitage trend test: P-value = 0.04, OR=1.09, 95%CI=(0.99-1....... Armitage trend test: P-value = 0.04, OR=1.09, 95%CI=(0.99-1.18) More... Significant association was found. Significant association was found. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
POM121L2 POM121 transmembrane nucleoporin-like 2 6p21.3 Mapped by Literature SNP

SNPs in LD with rs6932590 (count: 0) View in gBrowse (chr6:27281152..27281152 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Steinberg, S.,2012 Association results in schizophrenia follow-up samples(10,671 cases; 23,900 controls):OR(95% CI) = 1.10 (1.05, 1.14),P-value = 2.5 x 10-5 No significant association was observed. Negative

Overlap with MDD from cross-disorder studies (count: 0)