SNP Report

Basic Info
Name rs6904500 dbSNP Ensembl
Location chr6:122788451 - 122788451(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.310104
Functional Annotation downstream_gene_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000368444); upstream_gene_variant(ENST00000368440, ENST00000487215, ENST00000539041)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Iwayama, Y., 2010 T/C P-value for allele test is 0.209, p-value for genotype test ...... P-value for allele test is 0.209, p-value for genotype test is 0.4068, p-value is 0.9648 after correction by permutation test. More... Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
FABP7 fatty acid binding protein 7, brain 6q22-q23 1(1/0/0)
SMPDL3A sphingomyelin phosphodiesterase, acid-like 3A 6q22.32 Mapped by Literature SNP

SNPs in LD with rs6904500 (count: 0) View in gBrowse (chr6:122788451..122788451 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)