BDgene

SNP Report

Basic Info
Name rs6901299 dbSNP Ensembl
Location chr6:123454181 - 123454181(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.15016
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000334268, ENST00000418467, ENST00000427828, ENST00000434768, ENST00000587049, ENST00000587106, ENST00000589182, ENST00000625262, ENST00000625415, ENST00000628939, ENST00000629087); non_coding_transcript_variant(ENST00000418467, ENST00000427828, ENST00000434768, ENST00000587049, ENST00000587106, ENST00000589182, ENST00000625262, ENST00000625415, ENST00000628939, ENST00000629087)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Scott, L. J.,2009 G/A NIMH/Pritzker: OR (95% CI)=1.05(0.86-1.27), P-value = 0.66; ...... NIMH/Pritzker: OR (95% CI)=1.05(0.86-1.27), P-value = 0.66; GSK(reduced sample): OR (95% CI)=1.18(0.95-1.46), P-value = 0.12; WTCCC: OR (95% CI)=1.26(1.15-1.39), P-value = 0.000002; 3-study meta-analysis: OR (95% CI)=1.21(1.11-1.31), P-value = 0.0000097; Heterogeneity: I2%=35, P-value = 0.21 More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TRDN triadin 6q22.31 Mapped by Literature SNP

SNPs in LD with rs6901299 (count: 12) View in gBrowse (chr6:123454181..123484284 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 12)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)